Graph traversal
Shortest path
MolecularGraph.Graph.diameter — Methoddiameter(graph::AbstractGraph) -> IntCompute the diameter of the graph (the largest eccentricity of any nodes).
MolecularGraph.Graph.distance — Methoddistance(graph::AbstractGraph, source::Int, target::Int) -> Int
reversedistance(graph::DirectedGraph, source::Int, target::Int) -> IntCompute the distance (shortest path length) from source to target. If the nodes are not reachable each other, the value will be nothing.
MolecularGraph.Graph.distancematrix — Methoddistancematrix(graph::OrderedGraph) -> Matrix{Float64}Generate the distance matrix of the graph.
Note that the type of the generated matrix will be Float64. If the nodes are not reachable each other, the distance value will be Inf.
MolecularGraph.Graph.eccentricity — Methodeccentricity(graph::UndirectedGraph, v::Int) -> IntCompute the eccentricity of the graph (the largest distance between v and any other nodes).
MolecularGraph.Graph.isreachable — Methodreachablenodes(graph::AbstractGraph, u::Int, v::Int) -> Bool
reversereachablenodes(graph::DirectedGraph, u::Int, v::Int) -> BoolReturn whether the node v is reachable from u.
MolecularGraph.Graph.longestshortestpathnodes — Methodlongestshortestpathnodes(graph::UndirectedGraph) -> Vector{Int}Compute the longest shortest path in the graph (a path between two arbitrary peripheral nodes) as a vector of nodes that starts with one of the peripheral node and ends with the other side.
MolecularGraph.Graph.reachablenodes — Methodreachablenodes(graph::AbstractGraph, node::Int) -> Set{Int}
reversereachablenodes(graph::DirectedGraph, node::Int) -> Set{Int}Return the set of reachable nodes from node.
MolecularGraph.Graph.shortestpathedges — Methodshortestpathedges(graph::UndirectedGraph, u::Int, v::Int) -> Vector{Int}Compute the shortest path between u and v as a vector of the edges that forms the path. Return nothing if not reachable.
MolecularGraph.Graph.shortestpathnodes — Methodshortestpathnodes(graph::UndirectedGraph, u::Int, v::Int) -> Vector{Int}Compute the shortest path between u and v as a vector of the nodes that forms the path. Return nothing if not reachable.